prepare error

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Hi,

I am trying to run prepare on an enzyme-substrate complex and whatever I do I am getting the same error message:

0: pre_misfit: vector too small 9002

Is there anybody has an idea what to do and how to solve the problem?

My input is:

.
.
.
prepare
system legumain
source leg_inh.pdb
counter 7 Na
grid 24 0.5
touch 0.24
expand 0.10
center; orient
solvate
periodic
ignore
update lists
free
new_top new_seq
new_rst
write legumain_init.pdb
write legumain_em.rst
end; task prepare

Thanks,
Brigitta

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Can you share leg_inh.pdb?


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