From NWChem
Viewed 2649 times, With a total of 3 Posts

Just Got Here
Threads 2
Posts 4


2:25:36 PM PDT  Mon, Jul 2nd 2012 

HI!
I am new at NWCHEM and i have been running some tests on optimizing and running numerical frequencies with frozen atoms. And surprizingly I get very different results ( different frequencies) if I do the following:
CASE A:
A1. i generate a file.nw in which I specify geometry, charge basis set, active list ... and I put task dft optimize.
A2. I restart the calculation using the restart keyword and put task dft frequencies numerical
CASE B:
B1. I submit a job with the same molecule and all but I put both dft optimize and dft frequencies numerical in the same .nw, the frequency calculation didn't finish
B2. I restart the frequency calculation using restart.
I have pasted the .nw input files below ... could somebody tell me what is wrong? or what am I missing? is there some information I have to always put in the input file even if I restart the calculation?
Thanks!
A1
echo
start boptimizefroz
title 'boptimizefroz'
charge 0
geometry units angstrom noautoz nocenter noautosym
C 0.86999022 0.43499511 0.00000000
end
basis
H library def2tzvp
N library def2tzvp
C library def2tzvp
end
driver
maxiter 200
end
dft
iterations 200
xc cpbe96
mulliken
direct
end
set geometry:actlist 14:25
task dft optimize
A2
echo
restart boptimizefroz
title 'boptimizefroz'
task dft freq numerical
B1
the same as A1 plus :
task dft freq numerical
B2
echo
restart boptimizefrozfreq
title 'boptimizefroz'
charge 0
basis
H library def2tzvp
N library def2tzvp
C library def2tzvp
end
driver
maxiter 200
end
dft
iterations 200
xc cpbe96
mulliken
direct
end
set geometry:actlist 14:25
task dft freq numerical




Bert Forum:Admin, Forum:Mod, NWChemDeveloper, bureaucrat, sysop


Forum Vet
Threads 4
Posts 597


2:42:40 PM PDT  Mon, Jul 2nd 2012 

In A1/2. Did the DFT optimize converge? I.e. did you do a frequency restart using a converged geometry.
You may want to check the geometries used in A and B to see if the same geometries were used in the frequency calculation, and that the optimized geometries are actually the same.
If both items above are true, to reproduce, could you need to provide the full A1 input deck (with all atoms).
Thanks,
Bert
Quote:Noraplanas Jul 2nd 9:25 pmHI!
I am new at NWCHEM and i have been running some tests on optimizing and running numerical frequencies with frozen atoms. And surprizingly I get very different results ( different frequencies) if I do the following:
CASE A:
A1. i generate a file.nw in which I specify geometry, charge basis set, active list ... and I put task dft optimize.
A2. I restart the calculation using the restart keyword and put task dft frequencies numerical
CASE B:
B1. I submit a job with the same molecule and all but I put both dft optimize and dft frequencies numerical in the same .nw, the frequency calculation didn't finish
B2. I restart the frequency calculation using restart.
I have pasted the .nw input files below ... could somebody tell me what is wrong? or what am I missing? is there some information I have to always put in the input file even if I restart the calculation?
Thanks!
A1
echo
start boptimizefroz
title 'boptimizefroz'
charge 0
geometry units angstrom noautoz nocenter noautosym
C 0.86999022 0.43499511 0.00000000
end
basis
H library def2tzvp
N library def2tzvp
C library def2tzvp
end
driver
maxiter 200
end
dft
iterations 200
xc cpbe96
mulliken
direct
end
set geometry:actlist 14:25
task dft optimize
A2
echo
restart boptimizefroz
title 'boptimizefroz'
task dft freq numerical
B1
the same as A1 plus :
task dft freq numerical
B2
echo
restart boptimizefrozfreq
title 'boptimizefroz'
charge 0
basis
H library def2tzvp
N library def2tzvp
C library def2tzvp
end
driver
maxiter 200
end
dft
iterations 200
xc cpbe96
mulliken
direct
end
set geometry:actlist 14:25
task dft freq numerical




Just Got Here
Threads 2
Posts 4


10:28:02 AM PDT  Tue, Jul 3rd 2012 

Hi,
1. Yes in both cases the geometry converged, but I cannot vizualize the outputfile since I am fighting to get ECCE installed on my mac computer ( any other simpler software could be used for that?)
2. Secondly, even if the geometries are different once I run frequencies I get 25 imaginary frequencies which makes me doubt the frequency calculation did indeed locate the frozen atoms since to my understanding I should get no computed frequencies for those right?
Thanks,
Nora




Bert Forum:Admin, Forum:Mod, NWChemDeveloper, bureaucrat, sysop


Forum Vet
Threads 4
Posts 597


3:30:42 PM PDT  Tue, Jul 3rd 2012 

I'll need the full A1 input deck to try and reproduce and understand the issue.
Bert
Quote:Noraplanas Jul 3rd 5:28 pmHi,
1. Yes in both cases the geometry converged, but I cannot vizualize the outputfile since I am fighting to get ECCE installed on my mac computer ( any other simpler software could be used for that?)
2. Secondly, even if the geometries are different once I run frequencies I get 25 imaginary frequencies which makes me doubt the frequency calculation did indeed locate the frozen atoms since to my understanding I should get no computed frequencies for those right?
Thanks,
Nora



AWC's:
2.5.10 MediaWiki  Stand Alone Forum Extension
Forum theme style by: AWC