Thanks for your reply, I tried to run without the ecce_print keyword but still there is a problem. I am not sure what is the actual error in my input. So I am just posting the input file. 
 
Title "CRGD-calculations" 
 
start CRGD 
memory 1000 mb 
echo 
 
set tolguess 1.0e-7 
 
geometry Gd noautoz 
GD        0.00000        8.31870        4.27930 
end 
geometry Crup noautoz 
CR        0.00000        4.88840        4.27930 
end 
geometry Crdn noautoz 
CR        0.00000        4.88840        4.27930 
end 
geometry ligand noautoz 
 N        0.15210        3.38970        2.83390 
 N        2.05080        4.69790        4.17350 
 C        1.80200        2.04350        1.65420 
 C        1.44550        3.02460        2.59310 
 C       -0.80620        2.80460        2.12170 
 H       -1.71150        3.03180        2.30050 
 C        3.81810        3.37020        3.15260 
 C        2.46490        3.70440        3.32710 
 C       -0.53520        1.86560        1.11860 
 H       -1.24250        1.49430        0.60590 
 C        0.75830        1.48710        0.88390 
 H        0.95420        0.85260        0.20540 
 C        2.96900        5.39830        4.83560 
 H        2.68810        6.10070        5.40900 
 C        4.76090        4.11990        3.88040 
 H        5.68670        3.92760        3.79830 
 C        3.18930        1.68660        1.51660 
 H        3.43520        1.00070        0.90720 
 C        4.15410        2.31190        2.23890 
 H        5.06140        2.04760        2.13960 
 C        4.34390        5.12570        4.70870 
 H        4.97820        5.63890        5.19500 
 N       -0.15210        3.38970        5.72460 
 N       -2.05080        4.69790        4.38510 
 C       -1.80200        2.04350        6.90440 
 C       -1.44550        3.02460        5.96550 
 C        0.80620        2.80460        6.43690 
 H        1.71150        3.03180        6.25800 
 C       -3.81810        3.37020        5.40590 
 C       -2.46490        3.70440        5.23150 
 C        0.53520        1.86560        7.43990 
 H        1.24250        1.49430        7.95260 
 C       -0.75830        1.48710        7.67460 
 H       -0.95420        0.85260        8.35310 
 C       -2.96900        5.39830        3.72300 
 H       -2.68810        6.10070        3.14950 
 C       -4.76090        4.11990        4.67810 
 H       -5.68670        3.92760        4.76030 
 C       -3.18930        1.68660        7.04200 
 H       -3.43520        1.00070        7.65130 
 C       -4.15410        2.31190        6.31960 
 H       -5.06140        2.04760        6.41890 
 C       -4.34390        5.12570        3.84980 
 H       -4.97820        5.63890        3.36350 
 
end 
geometry bridge noautoz 
 O       -0.14070        6.33480        3.02900 
 C       -0.11550        6.16860        1.61070 
 H       -0.18880        5.21520        1.39160 
 H        0.72680        6.52030        1.25470 
 H       -0.86690        6.65400        1.21190 
 O        0.14070        6.33480        5.52950 
 C        0.11550        6.16860        6.94780 
 H        0.18880        5.21520        7.16690 
 H       -0.72680        6.52030        7.30390 
 H        0.86690        6.65400        7.34670 
 
end 
geometry Nitrate noautoz 
 N       -2.09400        9.83910        2.86850 
 O       -2.97960       10.48190        2.30770 
 O       -1.84410        8.63990        2.54360 
 O       -1.38560       10.34200        3.80140 
 N        2.09300        8.57100        2.22920 
 O        2.33320        7.96010        3.31520 
 O        0.92800        9.05850        2.09430 
 O        2.94300        8.69240        1.34640 
 N        2.09400        9.83910        5.69010 
 O        2.97960       10.48190        6.25080 
 O        1.84410        8.63990        6.01490 
 O        1.38560       10.34200        4.75720 
 N       -2.09300        8.57100        6.32940 
 O       -2.33320        7.96010        5.24330 
 O       -0.92800        9.05850        6.46430 
 O       -2.94300        8.69240        7.21210 
 
end 
 
geometry full noautoz 
GD        0.00000        8.31870        4.27930 
CR        0.00000        4.88840        4.27930 
 N        0.15210        3.38970        2.83390 
 N        2.05080        4.69790        4.17350 
 C        1.80200        2.04350        1.65420 
 C        1.44550        3.02460        2.59310 
 C       -0.80620        2.80460        2.12170 
 H       -1.71150        3.03180        2.30050 
 C        3.81810        3.37020        3.15260 
 C        2.46490        3.70440        3.32710 
 C       -0.53520        1.86560        1.11860 
 H       -1.24250        1.49430        0.60590 
 C        0.75830        1.48710        0.88390 
 H        0.95420        0.85260        0.20540 
 C        2.96900        5.39830        4.83560 
 H        2.68810        6.10070        5.40900 
 C        4.76090        4.11990        3.88040 
 H        5.68670        3.92760        3.79830 
 C        3.18930        1.68660        1.51660 
 H        3.43520        1.00070        0.90720 
 C        4.15410        2.31190        2.23890 
 H        5.06140        2.04760        2.13960 
 C        4.34390        5.12570        4.70870 
 H        4.97820        5.63890        5.19500 
 N       -0.15210        3.38970        5.72460 
 N       -2.05080        4.69790        4.38510 
 C       -1.80200        2.04350        6.90440 
 C       -1.44550        3.02460        5.96550 
 C        0.80620        2.80460        6.43690 
 H        1.71150        3.03180        6.25800 
 C       -3.81810        3.37020        5.40590 
 C       -2.46490        3.70440        5.23150 
 C        0.53520        1.86560        7.43990 
 H        1.24250        1.49430        7.95260 
 C       -0.75830        1.48710        7.67460 
 H       -0.95420        0.85260        8.35310 
 C       -2.96900        5.39830        3.72300 
 H       -2.68810        6.10070        3.14950 
 C       -4.76090        4.11990        4.67810 
 H       -5.68670        3.92760        4.76030 
 C       -3.18930        1.68660        7.04200 
 H       -3.43520        1.00070        7.65130 
 C       -4.15410        2.31190        6.31960 
 H       -5.06140        2.04760        6.41890 
 C       -4.34390        5.12570        3.84980 
 H       -4.97820        5.63890        3.36350 
O       -0.14070        6.33480        3.02900 
 C       -0.11550        6.16860        1.61070 
 H       -0.18880        5.21520        1.39160 
 H        0.72680        6.52030        1.25470 
 H       -0.86690        6.65400        1.21190 
 O        0.14070        6.33480        5.52950 
 C        0.11550        6.16860        6.94780 
 H        0.18880        5.21520        7.16690 
 H       -0.72680        6.52030        7.30390 
 H        0.86690        6.65400        7.34670 
N       -2.09400        9.83910        2.86850 
 O       -2.97960       10.48190        2.30770 
 O       -1.84410        8.63990        2.54360 
 O       -1.38560       10.34200        3.80140 
 N        2.09300        8.57100        2.22920 
 O        2.33320        7.96010        3.31520 
 O        0.92800        9.05850        2.09430 
 O        2.94300        8.69240        1.34640 
 N        2.09400        9.83910        5.69010 
 O        2.97960       10.48190        6.25080 
 O        1.84410        8.63990        6.01490 
 O        1.38560       10.34200        4.75720 
 N       -2.09300        8.57100        6.32940 
 O       -2.33320        7.96010        5.24330 
 O       -0.92800        9.05850        6.46430 
 O       -2.94300        8.69240        7.21210 
 
end 
 
BASIS "ao basis" print 
Gd   SP 
  17.2400000000000       3.607000091537422E-003 -2.072870013100241E-002 
  3.34600000000000       0.737570618717857       0.519148703280945 
  2.42900000000000       -1.71492784352095       -1.48838220940636 
 
Gd   SP 
 0.934900000000000        1.00000000000000        1.00000000000000 
 
Gd   SP 
 0.358800000000000        1.00000000000000        1.00000000000000 
 
Gd   SP 
 8.105000000000000E-002   1.00000000000000        1.00000000000000 
 
Gd   D 
 0.857300000000000       0.305193173183232 
 0.412800000000000       0.739945149015201 
 
Gd   D 
 0.151900000000000        1.00000000000000 
 
Gd   F 
  77.6000000000000       1.583755898700157E-002 
  28.6100000000000       9.647586944747537E-002 
  12.1300000000000       0.235859801924552 
  5.23900000000000       0.380304259854489 
  2.30500000000000       0.373451413617453 
 0.994200000000000       0.241992063517626 
 
Gd   F 
 0.403100000000000        1.00000000000000 
 
Cr    S 
254477.8070400              0.23386945693E-03       
 38131.7970540              0.18142601800E-02       
  8675.2930607              0.94363925721E-02       
  2455.0099848              0.38343639367E-01       
   799.16217787             0.12459194837     
   286.90021489             0.29489696029     
   111.25413232             0.41846149607     
    43.864152636            0.21633763420     
 
Cr    S 
   279.32669173            -0.23450908111E-01       
    86.274732376           -0.11080370027     
    13.555756113            0.53028965842     
     5.6978112751           0.51603516947     
 
Cr    S 
     8.5636582615          -0.38109545675     
     1.3988296768           1.1991591436      
 
Cr    S 
     0.57288171116          1.0000000         
 
Cr    S 
     0.090096171317         1.0000000         
 
Cr    S 
     0.034125885135         1.0000000         
 
Cr    P 
  1306.4398864              0.24277326185E-02       
   309.25311441             0.19544041017E-01       
    98.996273963            0.90651794553E-01       
    36.756916451            0.25699279154     
    14.566657077            0.40935504891     
     5.8739937432           0.23729388849     
 
Cr    P 
    22.890999695           -0.28166026613E-01       
     3.0855001822           0.56034120148     
     1.2132329118           0.98119019650     
 
Cr    P 
     0.44931680699          1.0000000         
 
Cr    D 
    43.720074476            0.13622964026E-01       
    12.391242652            0.78935180133E-01       
     4.2639442006           0.23833840000     
     1.5525221790           0.39526851122     
 
Cr    D 
     0.53761929485          1.0000000         
 
Cr    D 
     0.16493173074          1.0000000         
 
H    S 
        18.7311370              0.03349460 
         2.8253937              0.23472695 
         0.6401217              0.81375733 
 
H    S 
         0.1612778              1.00000000 
 
C    S 
      3047.5249000              0.0018347 
       457.3695100              0.0140373 
       103.9486900              0.0688426 
        29.2101550              0.2321844 
         9.2866630              0.4679413 
         3.1639270              0.3623120 
 
C    SP 
         7.8682724             -0.1193324              0.0689991 
         1.8812885             -0.1608542              0.3164240 
         0.5442493              1.1434564              0.7443083 
 
C    SP 
         0.1687144              1.0000000              1.0000000 
 
N    S 
      4173.5110000              0.0018348 
       627.4579000              0.0139950 
       142.9021000              0.0685870 
        40.2343300              0.2322410 
        12.8202100              0.4690700 
         4.3904370              0.3604550 
 
N    SP 
        11.6263580             -0.1149610              0.0675800 
         2.7162800             -0.1691180              0.3239070 
         0.7722180              1.1458520              0.7408950 
 
N    SP 
         0.2120313              1.0000000              1.0000000 
 
O    S 
      5484.6717000              0.0018311 
       825.2349500              0.0139501 
       188.0469600              0.0684451 
        52.9645000              0.2327143 
        16.8975700              0.4701930 
         5.7996353              0.3585209 
 
O    SP 
        15.5396160             -0.1107775              0.0708743 
         3.5999336             -0.1480263              0.3397528 
         1.0137618              1.1307670              0.7271586 
 
O    SP 
         0.2700058              1.0000000              1.0000000 
 
END 
 
ECP 
Gd nelec 46 
Gd       ul 
   1    13.095090800   -15.786726000 
   1     2.569738560    -6.127778140 
 
Gd      s 
   2     2.702265230  -137.902125000 
   2     2.933477410   208.964540000 
   0     9.850809640    16.858693600 
 
Gd      p 
   0    10.256201200    11.130834300 
   2     2.452732130   131.651321000 
   2     2.196934270   -77.444300800 
 
Gd      d 
   2     2.247169230    31.466411800 
   0     6.430643690     8.345072860 
 
END 
 
SO 
Gd ul 
 2     0.1936     -0.002991 
 2     0.7674     0.016336 
 2     2.6746     -0.054906 
 2     10.6942    0.231773 
 2     54.9518    -0.308907 
 1     168.3198   0.744017 
 
Gd P 
 2      0.5348      7.656000 
 2      0.7927      -37.030000 
 2      1.1057      64.505654 
 2      1.6420      -62.416736 
 2      2.6371      43.005868 
 2      4.7790      -26.468036 
 1      6.1238      3.420000 
 0      18.1064     -0.325904 
 
Gd D 
 2      0.9454   -1.175800 
 2      1.0870   -0.622737 
 2      1.3824   10.067101 
 2      1.9103   -20.624451 
 2      2.7984   21.943850 
 2      4.0477   -8.987886 
 1      9.7598   0.297823 
 0      15.5826  -0.002343 
 
end 
 
set geometry Gd  
charge 3.0 
dft 
xc B3lyp 
odft 
iterations 400 
convergence  energy 1e-6 density 5e-4 gradient 5e-4 \ 
             ncydp 0 damp 80 dampon 1d9 dampoff 1d-1  \ 
             ncyds 0 diis 5  diison 1d-2 
mult 8 
mulliken 
vectors input atomic \ 
        output Gd_SO.mos 
 
end 
task sodft energy 
 
set geometry Crup  
charge 3.0 
dft 
xc B3lyp 
odft 
iterations 400 
convergence  energy 1e-6 density 1e-4 gradient 5e-4 \ 
             ncydp 0 damp 80 dampon 1d9 dampoff 1d-1  \ 
             ncyds 0 diis 5  diison 1d-2 
mult 4 
mulliken 
vectors input atomic \ 
        output Crup_SO.mos 
 
end 
task sodft energy 
 
set geometry Crdn 
charge 3.0 
dft 
xc B3lyp 
odft 
iterations 400 
convergence  energy 1e-6 density 1e-4 gradient 5e-4 \ 
             ncydp 0 damp 80 dampon 1d9 dampoff 1d-1  \ 
             ncyds 0 diis 5  diison 1d-2 
mult -4 
mulliken 
vectors input atomic \ 
        output Crdn_SO.mos 
 
end 
task sodft energy 
 
set geometry ligand 
charge 0.0 
dft 
xc B3lyp 
odft 
iterations 400 
convergence  energy 1e-6 density 1e-4 gradient 5e-4 \ 
             ncydp 0 damp 80 dampon 1d9 dampoff 1d-1  \ 
             ncyds 0 diis 5  diison 1d-2 
mult 1 
mulliken 
vectors input atomic \ 
        output ligand_SO.mos 
 
end 
task sodft energy 
 
set geometry bridge 
charge -2 
dft 
xc B3lyp 
odft 
iterations 400 
convergence  energy 1e-6 density 1e-4 gradient 5e-4 \ 
             ncydp 0 damp 80 dampon 1d9 dampoff 1d-1  \ 
             ncyds 0 diis 5  diison 1d-2 
mult 1 
mulliken 
vectors input atomic \ 
        output bridge_SO.mos 
 
end 
task sodft energy 
 
set geometry Nitrate 
charge -4.0 
dft 
xc B3lyp 
odft 
iterations 400 
convergence  energy 1e-6 density 1e-4 gradient 5e-4 \ 
             ncydp 0 damp 80 dampon 1d9 dampoff 1d-1  \ 
             ncyds 0 diis 5  diison 1d-2 
mult 1 
mulliken 
vectors input atomic \ 
        output Nitrate_SO.mos 
 
end 
task sodft energy 
 
set geometry full 
charge 0.0 
dft 
xc B3lyp 
odft 
iterations 800 
convergence  energy 1e-6 density 5e-4 gradient 5e-4 \ 
             ncydp 0 damp 80 dampon 1d9 dampoff 1d-1  \ 
             ncyds 0 diis 5  diison 1d-2 
 
mult 11 
mulliken 
vectors input fragment Gd_SO.mos Crup_SO.mos ligand_SO.mos bridge_SO.mos Nitrate_SO.mos output Full-SO-CrGd-HS.mos 
end 
task sodft  
 
set geometry full 
charge 0.0 
dft 
xc B3lyp 
odft 
iterations 800 
convergence  energy 1e-6 density 5e-4 gradient 5e-4 \ 
             ncydp 0 damp 80 dampon 1d9 dampoff 1d-1  \ 
             ncyds 0 diis 5  diison 1d-2 
 
mult 5 
mulliken 
vectors input fragment Gd_SO.mos Crdn_SO.mos ligand_SO.mos bridge_SO.mos Nitrate_SO.mos output Full-SO-CrGd-HS.mos 
end 
task sodft
 |